Package: sunscanimport 0.3.4

sunscanimport: Imports data from sunscan device

Provides functions to import, convert and visualize LAI measurements from Sunscan device. An interactive shiny app is included.

Authors:Gunther Krauss <[email protected]>

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sunscanimport.pdf |sunscanimport.html✨
sunscanimport/json (API)
NEWS

# Install 'sunscanimport' in R:

install.packages('sunscanimport', repos = c('https://gk-crop.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/gk-crop/sunscanimport/issues

On CRAN:

data shiny

1.70 score 52 exports 80 dependencies

Last updated 2 years agofrom:dbd02e1eb5. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Oct 31 2024
R-4.5-win	NOTE	Oct 31 2024
R-4.5-linux	NOTE	Oct 31 2024
R-4.4-win	NOTE	Oct 31 2024
R-4.4-mac	NOTE	Oct 31 2024
R-4.3-win	NOTE	Oct 31 2024
R-4.3-mac	NOTE	Oct 31 2024

Exports:addPlotID addPlotIDFromData boxplotFileName convertSunScanDirectory convertSunscanFile countMeasurements createBoxplot createFolders createGridPlot createGridPlotLAI createSeriesInfo createSummary createTimePlot createTimePlotLAI dataFileName generateInitialGridData generateInitialMeasurementIdData generateInitialPlotIdData generateReport generateSampleMeasurementIdData generateSamplePlotIdData getData getFileList getHeader getParData getSmallHeader headerFileName isDataLine isMovedFile isSunscanFile isTitleLine movedFileName moveFilesToSubfolders moveOriginalFile pardataFileName readConvertedData readConvertedFiles readConvertedHeader readConvertedParData readConvertedSummary readIdData reorderDataColumns reportFileName runSunscanApp saveBoxplot saveData saveHeader saveParData splitLines stripFileExtension summaryFileName transformToWideFormat

Dependencies:base64enc bit bit64 bslib cachem cli clipr colorspace commonmark cpp11 crayon crosstalk digest dplyr DT evaluate fansi farver fastmap fontawesome fs generics ggplot2 glue gtable highr hms htmltools htmlwidgets httpuv isoband jquerylib jsonlite knitr labeling later lattice lazyeval lifecycle magrittr MASS Matrix memoise mgcv mime munsell nlme pillar pkgconfig prettyunits progress promises purrr R6 rappdirs RColorBrewer Rcpp readr rlang rmarkdown sass scales shiny sourcetools stringi stringr tibble tidyr tidyselect tinytex tzdb utf8 vctrs viridisLite vroom withr xfun xtable yaml zip

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Adds PlotID column to LAI data	addPlotID
Adds PlotID column to LAI data	addPlotIDFromData
Converts all SunScan data files in a directory (and it's subdirectories)	convertSunScanDirectory
Converts a SunScan data file	convertSunscanFile
Counts measurements	countMeasurements
Creates a boxplot for LAI data	createBoxplot
Creates (sub)folders for converted data and reports	createFolders
Plots the PlotNr arranged in a grid	createGridPlot
Plots LAI on a grid	createGridPlotLAI
Summarise information about measurement series	createSeriesInfo
Summarises data for each PlotID	createSummary
Plots measurements over time	createTimePlot
Plots measurements over time	createTimePlotLAI
Creates initial grid data	generateInitialGridData
Generates report concerning converted data	generateReport
Creates Sample MeasurementID data	generateSampleMeasurementIdData
Generates sample ID data	generateInitialMeasurementIdData generateInitialPlotIdData generateSamplePlotIdData
Extracts LAI data from the file lines	getData
Fetches recursively all possible data files from a directory	getFileList
Gets meta data from the file header	getHeader
Extracts PAR data from the file lines	getParData
Gets meta data from the file header	getSmallHeader
File name for the metadata file	boxplotFileName dataFileName headerFileName pardataFileName reportFileName summaryFileName
Checks if the line is a data line	isDataLine
Checks if the data file has been moved to subfolder 'original'	isMovedFile
Checks if given file is a valid SunScan file	isSunscanFile
Checks if the line is a title line	isTitleLine
Returns path for the data file moved to 'original' subfolder	movedFileName
Moves data file to subfolder 'original'	moveFilesToSubfolders
Moves data file to subfolder 'original'	moveOriginalFile
Reads converted data	readConvertedData readConvertedFiles readConvertedHeader readConvertedParData readConvertedSummary
Read dataframe with PlotID column	readIdData
Reorders columns in converted data	reorderDataColumns
Runs Shiny app	runSunscanApp
Saves metadata to file	saveBoxplot saveData saveHeader saveParData saveSummary
Splits the data when file contains multiple headers	splitLines
Strips the file extension	stripFileExtension
Functions to import, convert and visualise data from LAI Sunscan device	sunscanimport
Transform LAI data to wide format (1 row per PlotID)	transformToWideFormat